Δημοσιεύσεις

Άρθρα σε περιοδικά, προεκτυπώσεις, διδακτορική διατριβή και κεφάλαια βιβλίων

Άρθρα σε περιοδικά

Weaving together the past, present and future of Greek arachnofauna: Biodiversity, knowledge gaps and conservation

Bolanakis, Giannis, Paragkamian, Savvas, Maroulis, Leonidas, Kontos, Panagiotis, Poursanidis, Dimitris, Nikolakakis, Manolis, Trichas, Apostolos, Chatzaki, Maria · Insect Conservation and Diversity · 2026

LLM-Assessed Relatedness of Microbiome Study Descriptions Aligns more Strongly with Functional than with Taxonomic Profile Similarity

Venetsianou, Nefeli Kleopatra, Paragkamian, Savvas, Kalaentzis, Konstantinos, Loukas, Alexios, Damianou, Christina, Lagani, Vincenzo, Jensen, Lars Juhl, Pafilis, Evangelos · Microbial Ecology · 2026

CCMRI: a classification and curated database of climate change-related microbiome studies

Loukas, Alexios, Kalaentzis, Konstantinos, Venetsianou, Nefeli Kleopatra, Damianou, Christina, Paragkamian, Savvas, Lagani, Vincenzo, Jensen, Lars Juhl, Pafilis, Evangelos · Scientific Reports · 2026

First island-wide, single-day soil collection study on Crete reveals environmental drivers of microbial diversity

Holm, Johanna B., Paragkamian*, Savvas, Humphreys, Mike, Chatterjee, Apaala, Yarwood, Stephanie, Gaimaro, Josh, Stavroulaki, Melanthia, Tsaparis, Dimitris, Plaitis, Manolis, Kasapidis, Panagiotis, Darivianakis, Stelios, Kotoulas, Georgios, Magoulas, Antonios, Oulas, Anastasis, Kyrpiotakis, Zacharias, Pavlidis, Pavlos, ten Hoopen, Petra, Cochrane, Guy, Kooistra, H. C. F. Wiebe, Schriml, Jason R., Schriml, Bronwen E., Lagkouvardos, Ilias, Gkorezis, Panos, Davies, Neil, Laney, Christine, Stanish, Lee, Sutton, Granger, Tighe, Scott, Mizrachi, Ilene Karsch, Parks, Donovan, Yilmaz, Pelin, Carey, Chelsea, Buttigieg, Pier, Goldstein, Philip, Pafilis, Evangelos, Schriml, Lynn M. · Environmental Microbiome · 2025

The conservation status of the Cretan endemic Arthropods under Natura 2000 network

Bolanakis, Giannis, Paragkamian*, Savvas, Chatzaki, Maria, Kotitsa, Nefeli, Kardaki, Liubitsa, Trichas, Apostolos · Biodiversity and Conservation · 2024

Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration

Kokoli, Maria, Karatzas, Evangelos, Baltoumas, Fotis A, Schneider, Reinhard, Pafilis, Evangelos, Paragkamian, Savvas, Doncheva, Nadezhda T, Jensen, Lars Juhl, Pavlopoulos, Georgios A · NAR Genomics and Bioinformatics · 2023

Automating the Curation Process of Historical Literature on Marine Biodiversity Using Text Mining: The DECO Workflow

Paragkamian*, Savvas, Sarafidou, Georgia, Mavraki, Dimitra, Pavloudi, Christina, Beja, Joana, Eliezer, Menashè, Lipizer, Marina, Boicenco, Laura, Vandepitte, Leen, Perez-Perez, Ruben, Zafeiropoulos, Haris, Arvanitidis, Christos, Pafilis, Evangelos, Gerovasileiou, Vasilis · Frontiers in Marine Science · 2022

PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types

Zafeiropoulos, Haris, Paragkamian*, Savvas, Ninidakis, Stelios, Pavlopoulos, Georgios A., Jensen, Lars Juhl, Pafilis, Evangelos · Microorganisms · 2022

OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis

Baltoumas, Fotis A, Zafeiropoulou, Sofia, Karatzas, Evangelos, Paragkamian, Savvas, Thanati, Foteini, Iliopoulos, Ioannis, Eliopoulos, Aristides G, Schneider, Reinhard, Jensen, Lars Juhl, Pafilis, Evangelos, Pavlopoulos, Georgios A · NAR Genomics and Bioinformatics · 2021

Coupling beach ecology and macroplastics litter studies: Current trends and the way ahead

Lucia Fanini, Omar Defeo, Michael Elliott, Savvas Paragkamian, Maurizio Pinna, Vanessa-Sarah Salvo · Marine Pollution Bulletin · 2021

0s and 1s in marine molecular research: a regional HPC perspective

Zafeiropoulos, Haris, Gioti, Anastasia, Ninidakis, Stelios, Potirakis, Antonis, Paragkamian, Savvas, Angelova, Nelina, Antoniou, Aglaia, Danis, Theodoros, Kaitetzidou, Eliza, Kasapidis, Panagiotis, Kristoffersen, Jon Bent, Papadogiannis, Vasileios, Pavloudi, Christina, Ha, Quoc Viet, Lagnel, Jacques, Pattakos, Nikos, Perantinos, Giorgos, Sidirokastritis, Dimitris, Vavilis, Panagiotis, Kotoulas, Georgios, Manousaki, Tereza, Sarropoulou, Elena, Tsigenopoulos, Costas S, Arvanitidis, Christos, Magoulas, Antonios, Pafilis, Evangelos · GigaScience · 2021

Προεκτυπώσεις

Unravelling the genomic and functional arsenal of Bacilli endophytes from plants with different lifestyles

Arapitsas, Nikolaos P., Christakis, Christos A., Paragkamian*, Savvas, Soultatos, Stefanos, Reden, Franziska, Psarologaki, Chrysianna, Avramakis, Emmanouil, Stamatakis, Alexandros, Markakis, Emmanouil A., Sarris, Panagiotis F. · bioRxiv · 2026

An open occurrence dataset for European subterranean biodiversity

Nicolosi, Giuseppe, Bellvert, Adrià, Amorim, Isabel R., Balázs, Gergely, Biró, Anna, Borges, Paulo A. V., Brad, Traian, Cancellario, Tommaso, Cardoso, Pedro, Cresi, Lorenzo, Crespo, Luís Carlos, Čukuši\,́ Anđela, Čupi\' ́Iva, Deli\'cT́eo, Front, Sophie, Garc\'iaíllar\'in,d́rián, Geci, Donard, Hesselberg, Thomas, Kocot-Zalewska, Joanna, Kozel, Peter, Lips, Josiane, Mac\'ias-ŕnández, Nuria, Novak, Tone, Orom\'i, Peó, Pantini, Paolo, Paragamian, Kaloust, Paragkamian, Savvas, Patiño-Sauma, Diego, Pischiutta, Nikola, Pušnar, Žak, Rezac, Milan, Ribera, Carles, Rodrigues, Afonso, Rožman, Tin, Sivec, Ignac, Štangelj, Mojmir, Toli\'c, Kar ́and Zagmajster, Maja, Pavlek, Martina, Mammola, Stefano · EcoEvoRxiv · 2026

A Thousand Meters Deep: Vertical Profiling of the Subterranean Microbiome of Gourgouthakas Cave

Paragkamian*, Savvas, Christakis, Christos A., Michalopoulou, Vassiliki A., Plakogiannaki, Maria, Soultatos, Stefanos, Arapitsas, Nikolaos P., Vaxevanopoulos, Markos, Sotiriadis, Yorgos, Pennos, Christos, Markakis, Emmanouil A., Sarris, Panagiotis F. · bioRxiv · 2026

Βιβλία & Κεφάλαια

Ha Gorge: Exploring a Spectacular Hidden Landscape

Paragkamian, Savvas, Paragamian, Kaloust · 2015